Short HELP for the pdb to VRML Converter

PDB FILE: Enter the name of the PDB format file at your local machine.

GENERATE BONDS: If checked, additional bonds between the atoms are created. A maximum distance for the 2 atom types of a potentially connected atom pair is computed. If the actual distance is shorter, a new bond is created. The algorithm applied distributes the atoms over a 3D grid. Therefore, the order of the generated bonds is not very deterministic.

STYLE: Sets the style for the VRML representation of the molecular structure.

COLOR: Sets the overall color of the molecular structure. If the color is set to 'byAtom', the color the for atoms and bonds is defined by the atom type.

STICK RADIUS: Defines the radius in Angstrom for the cylinders in the 'Stick' and 'BallAndStick' style.

BALL RADIUS: Defines the factor which is multiplied with the VDW radius for the spheres in the 'BallAndWire' and 'BallAndStick' style.

DOWNLOAD TO FILE: If checked, a dialog box allows the selection of a file on your local machine where the converted data will be stored. Otherwise, if possible the converted file will be displayed by the browser (or a plugin).